IL_6TC3_113

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6TC3|1|23S1|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_113 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6TC3|1|23S1|C|1196
6TC3|1|23S1|G|1197
6TC3|1|23S1|U|1198
*
6TC3|1|23S1|A|1247
6TC3|1|23S1|G|1248
6TC3|1|23S1|U|1249
6TC3|1|23S1|G|1250

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15

Chain L201

50S ribosomal protein L20