IL_6TC3_118

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_118 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0875

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6TC3|1|23S1|C|1319
6TC3|1|23S1|C|1320
6TC3|1|23S1|A|1321
6TC3|1|23S1|A|1322
6TC3|1|23S1|C|1323
*
6TC3|1|23S1|G|1331
6TC3|1|23S1|G|1332
6TC3|1|23S1|G|1333

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L221

50S ribosomal protein L22

Chain L231

50S ribosomal protein L23