IL_6TC3_160

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_160 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.1

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|A|2297
6TC3|1|23S1|A|2298
6TC3|1|23S1|U|2299
*
6TC3|1|23S1|A|2317
6TC3|1|23S1|G|2318
6TC3|1|23S1|G|2319
6TC3|1|23S1|U|2320
6TC3|1|23S1|U|2321

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 05S1

5S ribosomal RNA; 5S rRNA

Chain L051

50S ribosomal protein L5

Chain L181

50S ribosomal protein L18