IL_6TC3_168

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|G|2576, 6TC3|1|23S1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_168 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0605

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6TC3|1|23S1|C|2510
6TC3|1|23S1|U|2511
6TC3|1|23S1|C|2512
*
6TC3|1|23S1|G|2574
6TC3|1|23S1|C|2575
6TC3|1|23S1|G|2576
6TC3|1|23S1|A|2577
6TC3|1|23S1|G|2578

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L321

50S ribosomal protein L32

Chain SPE1

SpeFL