IL_6TC3_171

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_171 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.0797

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TC3|1|23S1|G|2588
6TC3|1|23S1|A|2589
6TC3|1|23S1|A|2590
6TC3|1|23S1|C|2591
*
6TC3|1|23S1|G|2603
6TC3|1|23S1|PSU|2604
6TC3|1|23S1|PSU|2605
6TC3|1|23S1|C|2606

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2

Chain PTR1

Transfer RNA; tRNA