IL_6TC3_174

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_174 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0751

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6TC3|1|23S1|C|2652
6TC3|1|23S1|U|2653
6TC3|1|23S1|A|2654
6TC3|1|23S1|G|2655
6TC3|1|23S1|U|2656
6TC3|1|23S1|A|2657
6TC3|1|23S1|C|2658
*
6TC3|1|23S1|G|2663
6TC3|1|23S1|G|2664
6TC3|1|23S1|A|2665
6TC3|1|23S1|C|2666
6TC3|1|23S1|C|2667
6TC3|1|23S1|G|2668

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L061

50S ribosomal protein L6