IL_6TC3_186
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TC3_186 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0739
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6TC3|1|16S1|A|673
6TC3|1|16S1|G|674
6TC3|1|16S1|A|675
6TC3|1|16S1|A|676
6TC3|1|16S1|U|677
*
6TC3|1|16S1|G|713
6TC3|1|16S1|G|714
6TC3|1|16S1|A|715
6TC3|1|16S1|A|716
6TC3|1|16S1|U|717
Current chains
- Chain 16S1
- 16S rRNA
Nearby chains
- Chain L021
- 50S ribosomal protein L2
- Chain S061
- 30S ribosomal protein S6
- Chain S111
- 30S ribosomal protein S11
- Chain S181
- 30S ribosomal protein S18
- Chain S211
- 30S ribosomal protein S21
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