IL_6TC3_190

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_190 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0525

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|G|1666
6TC3|1|23S1|G|1667
6TC3|1|23S1|A|1668
6TC3|1|23S1|A|1669
6TC3|1|23S1|C|1670
6TC3|1|23S1|U|1671
6TC3|1|23S1|A|1672
6TC3|1|23S1|G|1673
6TC3|1|23S1|G|1674
*
6TC3|1|23S1|C|1990
6TC3|1|23S1|U|1991
6TC3|1|23S1|G|1992
6TC3|1|23S1|U|1993
6TC3|1|23S1|C|1994

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L141

50S ribosomal protein L14