IL_6TC3_191

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_191 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0561

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6TC3|1|23S1|U|1851
6TC3|1|23S1|U|1852
6TC3|1|23S1|A|1853
6TC3|1|23S1|A|1854
6TC3|1|23S1|U|1855
6TC3|1|23S1|U|1856
6TC3|1|23S1|G|1857
6TC3|1|23S1|A|1858
6TC3|1|23S1|U|1859
6TC3|1|23S1|G|1860
*
6TC3|1|23S1|U|1882
6TC3|1|23S1|U|1883
6TC3|1|23S1|G|1884
6TC3|1|23S1|A|1885
6TC3|1|23S1|U|1886
6TC3|1|23S1|C|1887
6TC3|1|23S1|G|1888
6TC3|1|23S1|A|1889
6TC3|1|23S1|A|1890
6TC3|1|23S1|G|1891

Current chains

Chain 23S1

23S rRNA

Nearby chains