IL_6TH6_078

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGUAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_078 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3764

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|C|329
6TH6|1|BA|G|330
6TH6|1|BA|A|331
6TH6|1|BA|A|332
6TH6|1|BA|G|333
*
6TH6|1|BA|C|382
6TH6|1|BA|G|383
6TH6|1|BA|U|384
6TH6|1|BA|A|385
6TH6|1|BA|A|386
6TH6|1|BA|G|387

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24