IL_6TH6_081

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCAC*GGGUGAAAAGAGC

Length

17 nucleotides

Bulged bases

6TH6|1|BA|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_081 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1837

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

6TH6|1|BA|G|520
6TH6|1|BA|C|521
6TH6|1|BA|A|522
6TH6|1|BA|C|523
*
6TH6|1|BA|G|534
6TH6|1|BA|G|535
6TH6|1|BA|G|536
6TH6|1|BA|U|537
6TH6|1|BA|G|538
6TH6|1|BA|A|539
6TH6|1|BA|A|540
6TH6|1|BA|A|541
6TH6|1|BA|A|542
6TH6|1|BA|G|543
6TH6|1|BA|A|544
6TH6|1|BA|G|545
6TH6|1|BA|C|546

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L22

Chain BX

50S ribosomal protein L24

Chain Bi

50S ribosomal protein L39e