IL_6TH6_116

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGCGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

6TH6|1|BA|G|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_116 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.1175

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6TH6|1|BA|G|1343
6TH6|1|BA|G|1344
6TH6|1|BA|C|1345
6TH6|1|BA|G|1346
6TH6|1|BA|G|1347
6TH6|1|BA|A|1348
6TH6|1|BA|A|1349
6TH6|1|BA|G|1350
*
6TH6|1|BA|U|1369
6TH6|1|BA|G|1370
6TH6|1|BA|G|1371
6TH6|1|BA|A|1372
6TH6|1|BA|C|1373

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e