IL_6TH6_169
3D structure
- PDB id
- 6TH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CCCAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TH6_169 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1294
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6TH6|1|BA|C|2756
6TH6|1|BA|C|2757
6TH6|1|BA|C|2758
6TH6|1|BA|A|2759
6TH6|1|BA|G|2760
6TH6|1|BA|U|2761
6TH6|1|BA|A|2762
6TH6|1|BA|C|2763
*
6TH6|1|BA|G|2768
6TH6|1|BA|G|2769
6TH6|1|BA|A|2770
6TH6|1|BA|A|2771
6TH6|1|BA|C|2772
6TH6|1|BA|A|2773
6TH6|1|BA|G|2774
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L3
- Chain BG
- 50S ribosomal protein L6
- Chain BL
- 50S ribosomal protein L14
- Chain Bj
- 50S ribosomal protein L40e
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