IL_6TH6_197

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

(OMU)AUAAG*UGAAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_197 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3942

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6TH6|1|BA|OMU|1623
6TH6|1|BA|A|1624
6TH6|1|BA|U|1625
6TH6|1|BA|A|1626
6TH6|1|BA|A|1627
6TH6|1|BA|G|1628
*
6TH6|1|BA|U|1660
6TH6|1|BA|G|1661
6TH6|1|BA|A|1662
6TH6|1|BA|A|1663
6TH6|1|BA|A|1664
6TH6|1|BA|G|1665

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Be

50S ribosomal protein L34e