IL_6TH6_211

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUGAG*(OMC)GAAAACAG

Length

14 nucleotides

Bulged bases

6TH6|1|BA|C|2882

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_211 not in the Motif Atlas

Homologous match to IL_4V9F_091

Geometric discrepancy: 0.1674

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6TH6|1|BA|C|2740
6TH6|1|BA|U|2741
6TH6|1|BA|G|2742
6TH6|1|BA|A|2743
6TH6|1|BA|G|2744
*
6TH6|1|BA|OMC|2876
6TH6|1|BA|G|2877
6TH6|1|BA|A|2878
6TH6|1|BA|A|2879
6TH6|1|BA|A|2880
6TH6|1|BA|A|2881
6TH6|1|BA|C|2882
6TH6|1|BA|A|2883
6TH6|1|BA|G|2884

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13