IL_6TNU_019

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6TNU|1|2|U|313, 6TNU|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1421

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6TNU|1|2|U|311
6TNU|1|2|A|312
6TNU|1|2|U|313
6TNU|1|2|C|314
6TNU|1|2|A|315
6TNU|1|2|A|316
*
6TNU|1|2|U|348
6TNU|1|2|U|349
6TNU|1|2|U|350
6TNU|1|2|C|351
6TNU|1|2|A|352
6TNU|1|2|A|353
6TNU|1|2|C|354
6TNU|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A