IL_6TNU_042

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_042 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1598

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6TNU|1|2|G|871
6TNU|1|2|G|872
6TNU|1|2|U|873
6TNU|1|2|C|874
*
6TNU|1|2|G|953
6TNU|1|2|G|954
6TNU|1|2|A|955
6TNU|1|2|C|956

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A