IL_6TNU_110

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6TNU|1|BQ|U|534, 6TNU|1|BQ|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_110 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1409

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|G|531
6TNU|1|BQ|A|532
6TNU|1|BQ|A|533
6TNU|1|BQ|U|534
6TNU|1|BQ|G|535
6TNU|1|BQ|U|536
6TNU|1|BQ|A|537
6TNU|1|BQ|G|538
*
6TNU|1|BQ|U|553
6TNU|1|BQ|A|554
6TNU|1|BQ|U|555
6TNU|1|BQ|U|556
6TNU|1|BQ|A|557
6TNU|1|BQ|U|558
6TNU|1|BQ|A|559
6TNU|1|BQ|G|560
6TNU|1|BQ|C|561

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain BH

60S ribosomal protein L20-A