IL_6TNU_143

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6TNU|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_143 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2181

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6TNU|1|BQ|U|1218
6TNU|1|BQ|C|1219
6TNU|1|BQ|U|1220
6TNU|1|BQ|A|1221
6TNU|1|BQ|G|1222
6TNU|1|BQ|A|1223
6TNU|1|BQ|C|1224
6TNU|1|BQ|A|1225
6TNU|1|BQ|G|1226
*
6TNU|1|BQ|C|1283
6TNU|1|BQ|C|1284
6TNU|1|BQ|G|1285
6TNU|1|BQ|A|1286
6TNU|1|BQ|A|1287

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BH

60S ribosomal protein L20-A