3D structure

PDB id
6TNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUAGUAG*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6TNU_150 not in the Motif Atlas
Homologous match to IL_8C3A_065
Geometric discrepancy: 0.0877
The information below is about IL_8C3A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6TNU|1|BQ|G|1444
6TNU|1|BQ|U|1445
6TNU|1|BQ|A|1446
6TNU|1|BQ|G|1447
6TNU|1|BQ|U|1448
6TNU|1|BQ|A|1449
6TNU|1|BQ|G|1450
*
6TNU|1|BQ|C|2354
6TNU|1|BQ|G|2355
6TNU|1|BQ|A|2356
6TNU|1|BQ|A|2357
6TNU|1|BQ|A|2358
6TNU|1|BQ|C|2359

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AX
60S ribosomal protein L17-A
Chain BE
60S ribosomal protein L4-A
Chain BS
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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