IL_6TNU_150

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_150 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0877

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6TNU|1|BQ|G|1444
6TNU|1|BQ|U|1445
6TNU|1|BQ|A|1446
6TNU|1|BQ|G|1447
6TNU|1|BQ|U|1448
6TNU|1|BQ|A|1449
6TNU|1|BQ|G|1450
*
6TNU|1|BQ|C|2354
6TNU|1|BQ|G|2355
6TNU|1|BQ|A|2356
6TNU|1|BQ|A|2357
6TNU|1|BQ|A|2358
6TNU|1|BQ|C|2359

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA