IL_6TNU_155

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6TNU|1|BQ|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_155 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.2341

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|U|1627
6TNU|1|BQ|C|1628
6TNU|1|BQ|U|1629
6TNU|1|BQ|U|1630
6TNU|1|BQ|C|1631
*
6TNU|1|BQ|G|1811
6TNU|1|BQ|G|1812
6TNU|1|BQ|A|1813
6TNU|1|BQ|A|1814
6TNU|1|BQ|U|1815
6TNU|1|BQ|A|1816

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A