3D structure

PDB id
6TNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAU*AGGAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6TNU_156 not in the Motif Atlas
Homologous match to IL_8C3A_073
Geometric discrepancy: 0.0876
The information below is about IL_8C3A_073
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_95716.2
Basepair signature
cWW-cWW-tHS-tHS-tSH-cWW
Number of instances in this motif group
18

Unit IDs

6TNU|1|BQ|U|1645
6TNU|1|BQ|G|1646
6TNU|1|BQ|A|1647
6TNU|1|BQ|A|1648
6TNU|1|BQ|U|1649
*
6TNU|1|BQ|A|1806
6TNU|1|BQ|G|1807
6TNU|1|BQ|G|1808
6TNU|1|BQ|A|1809
6TNU|1|BQ|A|1810

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AN
60S ribosomal protein L27-A
Chain AW
60S ribosomal protein L2-A
Chain BN
60S ribosomal protein L34-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.123 s