IL_6TNU_163

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_163 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0853

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6TNU|1|BQ|A|1883
6TNU|1|BQ|A|1884
6TNU|1|BQ|U|1885
6TNU|1|BQ|A|1886
6TNU|1|BQ|A|1887
6TNU|1|BQ|U|1888
6TNU|1|BQ|G|1889
*
6TNU|1|BQ|C|2346
6TNU|1|BQ|U|2347
6TNU|1|BQ|A|2348
6TNU|1|BQ|U|2349

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A