IL_6TNU_189

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_189 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.1489

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|C|2666
6TNU|1|BQ|A|2667
6TNU|1|BQ|U|2668
*
6TNU|1|BQ|A|2686
6TNU|1|BQ|G|2687
6TNU|1|BQ|U|2688
6TNU|1|BQ|A|2689
6TNU|1|BQ|G|2690

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BR

5S ribosomal RNA; 5S rRNA