IL_6TPQ_083
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 6TPQ|1|U|A|1965, 6TPQ|1|U|U|1971, 6TPQ|1|U|C|1990
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_083 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1965
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
6TPQ|1|U|C|1961
6TPQ|1|U|G|1962
6TPQ|1|U|A|1963
6TPQ|1|U|A|1964
6TPQ|1|U|A|1965
6TPQ|1|U|U|1966
6TPQ|1|U|U|1967
6TPQ|1|U|C|1968
6TPQ|1|U|C|1969
6TPQ|1|U|U|1970
6TPQ|1|U|U|1971
6TPQ|1|U|G|1972
*
6TPQ|1|U|C|1988
6TPQ|1|U|C|1989
6TPQ|1|U|C|1990
6TPQ|1|U|G|1991
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
Coloring options: