IL_6U48_007

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0761

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6U48|1|CA|C|239
6U48|1|CA|C|240
6U48|1|CA|A|241
6U48|1|CA|G|242
6U48|1|CA|U|243
6U48|1|CA|A|244
6U48|1|CA|G|245
*
6U48|1|CA|C|253
6U48|1|CA|G|254
6U48|1|CA|A|255
6U48|1|CA|A|256
6U48|1|CA|C|257
6U48|1|CA|G|258

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein bL35

Chain CM

50S ribosomal protein uL15