IL_6U48_014

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_014 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.0848

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|U|606
6U48|1|CA|U|607
6U48|1|CA|A|608
6U48|1|CA|A|609
6U48|1|CA|C|610
*
6U48|1|CA|G|618
6U48|1|CA|G|619
6U48|1|CA|G|620
6U48|1|CA|A|621
6U48|1|CA|G|622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15