IL_6U48_016

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6U48|1|CA|G|801, 6U48|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0732

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|674
6U48|1|CA|A|675
6U48|1|CA|A|676
6U48|1|CA|A|677
6U48|1|CA|C|678
*
6U48|1|CA|G|799
6U48|1|CA|A|800
6U48|1|CA|G|801
6U48|1|CA|A|802
6U48|1|CA|U|803
6U48|1|CA|A|804
6U48|1|CA|G|805
6U48|1|CA|C|806

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15