IL_6U48_021
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6U48|1|CA|G|776, 6U48|1|CA|A|788, 6U48|1|CA|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6U48_021 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0844
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6U48|1|CA|G|775
6U48|1|CA|G|776
6U48|1|CA|G|777
*
6U48|1|CA|C|787
6U48|1|CA|A|788
6U48|1|CA|A|789
6U48|1|CA|U|790
6U48|1|CA|C|791
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain A
- phazolicin
- Chain C3
- 50S ribosomal protein bL34
- Chain CC
- 50S ribosomal protein uL2
- Chain CT
- 50S ribosomal protein uL22
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