IL_6U48_023

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

6U48|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_023 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.1173

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|U|847
6U48|1|CA|C|848
*
6U48|1|CA|G|930
6U48|1|CA|U|931
6U48|1|CA|U|932
6U48|1|CA|A|933

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein uL30