IL_6U48_030

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6U48|1|CA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_030 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1349

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6U48|1|CA|C|994
6U48|1|CA|C|995
6U48|1|CA|A|996
*
6U48|1|CA|U|1159
6U48|1|CA|G|1160

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein uL30

Chain CK

50S ribosomal protein uL13

Chain CR

50S ribosomal protein bL20

Chain CS

50S ribosomal protein bL21