IL_6U48_032

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_032 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6U48|1|CA|U|1004
6U48|1|CA|C|1005
6U48|1|CA|C|1006
6U48|1|CA|C|1007
6U48|1|CA|A|1008
6U48|1|CA|A|1009
6U48|1|CA|A|1010
6U48|1|CA|G|1011
*
6U48|1|CA|C|1150
6U48|1|CA|A|1151

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein uL13

Chain CR

50S ribosomal protein bL20