IL_6U48_037
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6U48_037 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.2017
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6U48|1|CA|G|1038
6U48|1|CA|A|1039
6U48|1|CA|A|1040
6U48|1|CA|G|1041
*
6U48|1|CA|C|1114
6U48|1|CA|G|1115
6U48|1|CA|G|1116
6U48|1|CA|C|1117
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C5
- 50S ribosomal protein bL36
- Chain CG
- 50S ribosomal protein uL6
- Chain CN
- 50S ribosomal protein uL16
- Chain CW
- 50S ribosomal protein bL25
Coloring options: