IL_6U48_040

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6U48|1|CA|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_040 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3506

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6U48|1|CA|G|1087
6U48|1|CA|A|1088
6U48|1|CA|A|1089
6U48|1|CA|A|1090
6U48|1|CA|G|1091
*
6U48|1|CA|C|1100
6U48|1|CA|U|1101
6U48|1|CA|C|1102

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CJ

50S ribosomal protein uL11