IL_6U48_041

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6U48|1|CA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_041 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.102

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6U48|1|CA|C|1196
6U48|1|CA|G|1197
6U48|1|CA|U|1198
*
6U48|1|CA|A|1247
6U48|1|CA|G|1248
6U48|1|CA|U|1249
6U48|1|CA|G|1250

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15

Chain CR

50S ribosomal protein bL20