IL_6U48_043

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6U48|1|CA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_043 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0868

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6U48|1|CA|C|1208
6U48|1|CA|U|1209
6U48|1|CA|G|1210
6U48|1|CA|C|1211
6U48|1|CA|G|1212
6U48|1|CA|A|1213
6U48|1|CA|A|1214
6U48|1|CA|G|1215
*
6U48|1|CA|U|1234
6U48|1|CA|G|1235
6U48|1|CA|G|1236
6U48|1|CA|A|1237
6U48|1|CA|G|1238

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein bL20