IL_6U48_045

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_045 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1168

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6U48|1|CA|G|1310
6U48|1|CA|G|1311
6U48|1|CA|U|1312
6U48|1|CA|U|1313
*
6U48|1|CA|A|1603
6U48|1|CA|C|1604

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34

Chain CU

50S ribosomal protein uL23