IL_6U48_046

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6U48|1|CA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_046 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1367

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6U48|1|CA|C|1319
6U48|1|CA|C|1320
6U48|1|CA|A|1321
6U48|1|CA|A|1322
6U48|1|CA|C|1323
*
6U48|1|CA|G|1331
6U48|1|CA|G|1332
6U48|1|CA|G|1333

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein uL22

Chain CU

50S ribosomal protein uL23