IL_6U48_047

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_047 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|C|1351
6U48|1|CA|U|1352
6U48|1|CA|A|1353
6U48|1|CA|A|1354
6U48|1|CA|G|1355
*
6U48|1|CA|C|1376
6U48|1|CA|G|1377
6U48|1|CA|A|1378
6U48|1|CA|U|1379
6U48|1|CA|G|1380

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34

Chain CC

50S ribosomal protein uL2