IL_6U48_051

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6U48|1|CA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_051 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1715

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|G|1432
6U48|1|CA|A|1433
6U48|1|CA|A|1434
6U48|1|CA|G|1435
*
6U48|1|CA|C|1557
6U48|1|CA|C|1558
6U48|1|CA|U|1559
6U48|1|CA|G|1560
6U48|1|CA|C|1561

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2