IL_6U48_060

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_060 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.0961

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

6U48|1|CA|G|1663
6U48|1|CA|A|1664
6U48|1|CA|A|1665
*
6U48|1|CA|U|1995
6U48|1|CA|C|1996
6U48|1|CA|C|1997

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CL

50S ribosomal protein uL14

Chain CQ

50S ribosomal protein bL19