IL_6U48_090

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_090 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3301

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6U48|1|CA|C|2456
6U48|1|CA|PSU|2457
6U48|1|CA|G|2458
6U48|1|CA|A|2459
*
6U48|1|CA|U|2493
6U48|1|CA|G|2494
6U48|1|CA|G|2495

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein uL16