IL_6U48_094

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6U48|1|CA|G|2576, 6U48|1|CA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_094 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0781

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6U48|1|CA|C|2510
6U48|1|CA|U|2511
6U48|1|CA|C|2512
*
6U48|1|CA|G|2574
6U48|1|CA|C|2575
6U48|1|CA|G|2576
6U48|1|CA|A|2577
6U48|1|CA|G|2578

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

phazolicin

Chain C1

50S ribosomal protein bL32

Chain CD

50S ribosomal protein uL3