IL_6U48_096

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6U48|1|CA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_096 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.079

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6U48|1|CA|U|2522
6U48|1|CA|G|2523
*
6U48|1|CA|C|2540
6U48|1|CA|A|2541
6U48|1|CA|A|2542
6U48|1|CA|G|2543

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CK

50S ribosomal protein uL13