IL_6U48_100

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_100 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|C|2652
6U48|1|CA|U|2653
6U48|1|CA|A|2654
6U48|1|CA|G|2655
6U48|1|CA|U|2656
6U48|1|CA|A|2657
6U48|1|CA|C|2658
*
6U48|1|CA|G|2663
6U48|1|CA|G|2664
6U48|1|CA|A|2665
6U48|1|CA|C|2666
6U48|1|CA|C|2667
6U48|1|CA|G|2668

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CG

50S ribosomal protein uL6

Chain CL

50S ribosomal protein uL14