IL_6U48_104

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

6U48|1|CA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_104 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|G|2737
6U48|1|CA|A|2738
6U48|1|CA|U|2739
6U48|1|CA|A|2740
6U48|1|CA|A|2741
6U48|1|CA|G|2742
*
6U48|1|CA|C|2762
6U48|1|CA|G|2763
6U48|1|CA|A|2764
6U48|1|CA|A|2765
6U48|1|CA|A|2766
6U48|1|CA|C|2767

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CG

50S ribosomal protein uL6

Chain CK

50S ribosomal protein uL13