IL_6U48_113
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6U48_113 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0788
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6U48|1|CB|C|71
6U48|1|CB|G|72
6U48|1|CB|A|73
6U48|1|CB|U|74
6U48|1|CB|G|75
6U48|1|CB|G|76
6U48|1|CB|U|77
6U48|1|CB|A|78
6U48|1|CB|G|79
*
6U48|1|CB|C|97
6U48|1|CB|G|98
6U48|1|CB|A|99
6U48|1|CB|G|100
6U48|1|CB|A|101
6U48|1|CB|G|102
6U48|1|CB|U|103
6U48|1|CB|A|104
6U48|1|CB|G|105
Current chains
- Chain CB
- 5S rRNA
Nearby chains
- Chain C0
- 50S ribosomal protein uL30
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CN
- 50S ribosomal protein uL16
- Chain CW
- 50S ribosomal protein bL25
Coloring options: