IL_6U48_117

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6U48|1|CA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_117 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3166

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|C|1043
6U48|1|CA|C|1044
6U48|1|CA|C|1045
6U48|1|CA|A|1046
6U48|1|CA|G|1047
6U48|1|CA|A|1048
6U48|1|CA|C|1049
6U48|1|CA|A|1050
6U48|1|CA|G|1051
*
6U48|1|CA|U|1108
6U48|1|CA|C|1109
6U48|1|CA|G|1110
6U48|1|CA|A|1111
6U48|1|CA|G|1112

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CG

50S ribosomal protein uL6