IL_6U48_119

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_119 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|1666
6U48|1|CA|G|1667
6U48|1|CA|A|1668
6U48|1|CA|A|1669
6U48|1|CA|C|1670
6U48|1|CA|U|1671
6U48|1|CA|A|1672
6U48|1|CA|G|1673
6U48|1|CA|G|1674
*
6U48|1|CA|C|1990
6U48|1|CA|U|1991
6U48|1|CA|G|1992
6U48|1|CA|U|1993
6U48|1|CA|C|1994

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CL

50S ribosomal protein uL14