IL_6UZ7_024

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

6UZ7|1|2|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_024 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1228

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6UZ7|1|2|C|442
6UZ7|1|2|C|443
6UZ7|1|2|A|444
6UZ7|1|2|A|445
6UZ7|1|2|U|446
6UZ7|1|2|C|447
*
6UZ7|1|2|G|457
6UZ7|1|2|G|458
6UZ7|1|2|A|459
6UZ7|1|2|G|460

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24